Python/data_structures/kd_tree/tests/test_kdtree.py

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Implemented Suffix Tree Data Structure (#11554) * Implemented KD-Tree Data Structure * Implemented KD-Tree Data Structure. updated DIRECTORY.md. * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Create __init__.py * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Replaced legacy `np.random.rand` call with `np.random.Generator` in kd_tree/example_usage.py * Replaced legacy `np.random.rand` call with `np.random.Generator` in kd_tree/hypercube_points.py * added typehints and docstrings * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * docstring for search() * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Added tests. Updated docstrings/typehints * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * updated tests and used | for type annotations * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * E501 for build_kdtree.py, hypercube_points.py, nearest_neighbour_search.py * I001 for example_usage.py and test_kdtree.py * I001 for example_usage.py and test_kdtree.py * Update data_structures/kd_tree/build_kdtree.py Co-authored-by: Christian Clauss <cclauss@me.com> * Update data_structures/kd_tree/example/hypercube_points.py Co-authored-by: Christian Clauss <cclauss@me.com> * Update data_structures/kd_tree/example/hypercube_points.py Co-authored-by: Christian Clauss <cclauss@me.com> * Added new test cases requested in Review. Refactored the test_build_kdtree() to include various checks. * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Considered ruff errors * Considered ruff errors * Apply suggestions from code review * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Update kd_node.py * imported annotations from __future__ * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Implementation of the suffix tree data structure * Adding data to DIRECTORY.md * Minor file renaming * minor correction * renaming in DIRECTORY.md * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Considering ruff part-1 * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Considering ruff part-2 * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Considering ruff part-3 * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Considering ruff part-4 * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Considering ruff part-5 * Implemented Suffix Tree Data Structure. Added some comments to my files in #11532, #11554. * updating DIRECTORY.md * Implemented Suffix Tree Data Structure. Added some comments to my files in #11532, #11554. --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Christian Clauss <cclauss@me.com> Co-authored-by: Ramy-Badr-Ahmed <Ramy-Badr-Ahmed@users.noreply.github.com>
2024-09-28 13:37:00 +00:00
# Created by: Ramy-Badr-Ahmed (https://github.com/Ramy-Badr-Ahmed)
# in Pull Request: #11532
# https://github.com/TheAlgorithms/Python/pull/11532
#
# Please mention me (@Ramy-Badr-Ahmed) in any issue or pull request
# addressing bugs/corrections to this file.
# Thank you!
kd tree data structure implementation (#11532) * Implemented KD-Tree Data Structure * Implemented KD-Tree Data Structure. updated DIRECTORY.md. * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Create __init__.py * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Replaced legacy `np.random.rand` call with `np.random.Generator` in kd_tree/example_usage.py * Replaced legacy `np.random.rand` call with `np.random.Generator` in kd_tree/hypercube_points.py * added typehints and docstrings * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * docstring for search() * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Added tests. Updated docstrings/typehints * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * updated tests and used | for type annotations * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * E501 for build_kdtree.py, hypercube_points.py, nearest_neighbour_search.py * I001 for example_usage.py and test_kdtree.py * I001 for example_usage.py and test_kdtree.py * Update data_structures/kd_tree/build_kdtree.py Co-authored-by: Christian Clauss <cclauss@me.com> * Update data_structures/kd_tree/example/hypercube_points.py Co-authored-by: Christian Clauss <cclauss@me.com> * Update data_structures/kd_tree/example/hypercube_points.py Co-authored-by: Christian Clauss <cclauss@me.com> * Added new test cases requested in Review. Refactored the test_build_kdtree() to include various checks. * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Considered ruff errors * Considered ruff errors * Apply suggestions from code review * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Update kd_node.py * imported annotations from __future__ * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Christian Clauss <cclauss@me.com>
2024-09-03 12:39:09 +00:00
import numpy as np
import pytest
from data_structures.kd_tree.build_kdtree import build_kdtree
from data_structures.kd_tree.example.hypercube_points import hypercube_points
from data_structures.kd_tree.kd_node import KDNode
from data_structures.kd_tree.nearest_neighbour_search import nearest_neighbour_search
@pytest.mark.parametrize(
("num_points", "cube_size", "num_dimensions", "depth", "expected_result"),
[
(0, 10.0, 2, 0, None), # Empty points list
(10, 10.0, 2, 2, KDNode), # Depth = 2, 2D points
(10, 10.0, 3, -2, KDNode), # Depth = -2, 3D points
],
)
def test_build_kdtree(num_points, cube_size, num_dimensions, depth, expected_result):
"""
Test that KD-Tree is built correctly.
Cases:
- Empty points list.
- Positive depth value.
- Negative depth value.
"""
points = (
hypercube_points(num_points, cube_size, num_dimensions).tolist()
if num_points > 0
else []
)
kdtree = build_kdtree(points, depth=depth)
if expected_result is None:
# Empty points list case
assert kdtree is None, f"Expected None for empty points list, got {kdtree}"
else:
# Check if root node is not None
assert kdtree is not None, "Expected a KDNode, got None"
# Check if root has correct dimensions
assert (
len(kdtree.point) == num_dimensions
), f"Expected point dimension {num_dimensions}, got {len(kdtree.point)}"
# Check that the tree is balanced to some extent (simplistic check)
assert isinstance(
kdtree, KDNode
), f"Expected KDNode instance, got {type(kdtree)}"
def test_nearest_neighbour_search():
"""
Test the nearest neighbor search function.
"""
num_points = 10
cube_size = 10.0
num_dimensions = 2
points = hypercube_points(num_points, cube_size, num_dimensions)
kdtree = build_kdtree(points.tolist())
rng = np.random.default_rng()
query_point = rng.random(num_dimensions).tolist()
nearest_point, nearest_dist, nodes_visited = nearest_neighbour_search(
kdtree, query_point
)
# Check that nearest point is not None
assert nearest_point is not None
# Check that distance is a non-negative number
assert nearest_dist >= 0
# Check that nodes visited is a non-negative integer
assert nodes_visited >= 0
def test_edge_cases():
"""
Test edge cases such as an empty KD-Tree.
"""
empty_kdtree = build_kdtree([])
query_point = [0.0] * 2 # Using a default 2D query point
nearest_point, nearest_dist, nodes_visited = nearest_neighbour_search(
empty_kdtree, query_point
)
# With an empty KD-Tree, nearest_point should be None
assert nearest_point is None
assert nearest_dist == float("inf")
assert nodes_visited == 0
if __name__ == "__main__":
import pytest
pytest.main()