Added Suffix Array and LCP implementation

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Putul Singh 2024-10-19 12:20:31 +05:30 committed by GitHub
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from typing import List
class SuffixArray:
def __init__(self, text: str) -> None:
"""
Initializes the class with the input text and builds the suffix and LCP arrays.
"""
self.text = text
self.suffix_array = self.build_suffix_array()
self.lcp_array = self.build_lcp_array()
def build_suffix_array(self) -> List[int]:
"""
Builds the suffix array for the input string.
Returns the suffix array (a list of starting indices of suffixes in sorted order).
Example:
>>> sa = SuffixArray("banana")
>>> sa.suffix_array
[5, 3, 1, 0, 4, 2]
"""
n = len(self.text)
suffixes = sorted(range(n), key=lambda i: self.text[i:])
return suffixes
def build_lcp_array(self) -> List[int]:
"""
Builds the LCP (Longest Common Prefix) array for the suffix array.
LCP[i] gives the length of the longest common prefix of the suffixes starting at suffix_array[i] and suffix_array[i-1].
Example:
>>> sa = SuffixArray("banana")
>>> sa.lcp_array
[0, 1, 3, 0, 0, 2]
"""
n = len(self.text)
suffix_array = self.suffix_array
rank = [0] * n
lcp = [0] * n
# Build the rank array where rank[i] gives the position of the suffix starting at index i
for i, suffix in enumerate(suffix_array):
rank[suffix] = i
h = 0
for i in range(n):
if rank[i] > 0:
j = suffix_array[rank[i] - 1]
while (i + h < n) and (j + h < n) and self.text[i + h] == self.text[j + h]:
h += 1
lcp[rank[i]] = h
if h > 0:
h -= 1
return lcp
def display(self) -> None:
"""
Displays the suffix array and LCP array for the input string.
Example:
>>> sa = SuffixArray("banana")
>>> sa.display()
Suffix Array:
5: a
3: ana
1: anana
0: banana
4: na
2: nana
LCP Array:
LCP between a and ana: 1
LCP between ana and anana: 3
LCP between anana and banana: 0
LCP between banana and na: 0
LCP between na and nana: 2
"""
print("Suffix Array:")
for idx in self.suffix_array:
print(f"{idx}: {self.text[idx:]}")
print("\nLCP Array:")
for i in range(1, len(self.lcp_array)):
print(
f"LCP between {self.text[self.suffix_array[i - 1]:]} and {self.text[self.suffix_array[i]:]}: {self.lcp_array[i]}")
# Example usage:
if __name__ == "__main__":
text = "banana"
sa = SuffixArray(text)
sa.display()