From 1aeb4508fabefa26cdbe38f53c2485feb5a6e54c Mon Sep 17 00:00:00 2001 From: samoturk Date: Mon, 25 Aug 2014 11:25:54 +0200 Subject: [PATCH 1/2] Added: orange, RDKit, Open Babel, cclib and Biopython --- README.md | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/README.md b/README.md index b3f54a90..e3c22b70 100644 --- a/README.md +++ b/README.md @@ -839,6 +839,12 @@ A curated list of awesome Python frameworks, libraries and software. Inspired by * [SymPy](https://github.com/sympy/sympy) - A Python library for symbolic mathematics. * [statsmodels](https://github.com/statsmodels/statsmodels) - Statistical modeling and econometrics in Python. * [astropy](http://www.astropy.org/) - A community Python library for Astronomy. +* [orange](http://orange.biolab.si/) - Data mining, data visualization, analysis and machine learning through visual programming or Python scripting. +* [RDKit](http://www.rdkit.org/) - Cheminformatics and Machine Learning Software. +* [Open Babel](http://openbabel.org/wiki/Main_Page) - A chemical toolbox designed to speak the many languages of chemical data. +* [cclib](http://cclib.github.io/) - A library for parsing and interpreting the results of computational chemistry packages. +* [Biopython](http://biopython.org/wiki/Main_Page) - Biopython is a set of freely available tools for biological computation. + ## Data Visualization From 2d49336fd2469e11894f494ed03f679ab7694ae6 Mon Sep 17 00:00:00 2001 From: samoturk Date: Fri, 29 Aug 2014 11:52:12 +0200 Subject: [PATCH 2/2] Added bcbb and bcbio-nextgen to Science and Data Analysis --- README.md | 3 +++ 1 file changed, 3 insertions(+) diff --git a/README.md b/README.md index e3c22b70..11943106 100644 --- a/README.md +++ b/README.md @@ -844,6 +844,9 @@ A curated list of awesome Python frameworks, libraries and software. Inspired by * [Open Babel](http://openbabel.org/wiki/Main_Page) - A chemical toolbox designed to speak the many languages of chemical data. * [cclib](http://cclib.github.io/) - A library for parsing and interpreting the results of computational chemistry packages. * [Biopython](http://biopython.org/wiki/Main_Page) - Biopython is a set of freely available tools for biological computation. +* [bccb](https://github.com/chapmanb/bcbb) - Collection of useful code related to biological analysis. +* [bcbio-nextgen](https://github.com/chapmanb/bcbio-nextgen) - A toolkit providing best-practice pipelines for fully automated high throughput sequencing analysis. + ## Data Visualization