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rasbt 2015-02-06 15:09:13 -05:00
parent 45c931b3f9
commit cdac474115
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useful_scripts/large_csv_to_sqlite.py
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@ -21,7 +21,7 @@ chunksize = 100000 # number of lines to process at each iteration
columns = ['molecule_id','charge','db','drugsnow','hba','hbd','loc','nrb','smiles'] columns = ['molecule_id','charge','db','drugsnow','hba','hbd','loc','nrb','smiles']
# Get number of lines in the CSV file # Get number of lines in the CSV file
nlines = subprocess.check_output('wc -l %s' % in_csv, shell=True) nlines = subprocess.check_output(['wc', '-l', in_csv])
nlines = int(nlines.split()[0]) nlines = int(nlines.split()[0])
# connect to database # connect to database